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Abstract BackgroundMicroorganisms are the biotic foundation for nutrient cycling across ecosystems, and their assembly is often based on the nutrient availability of their environment. Though previous research has explored the seasonal lake turnover and geochemical cycling within the Salton Sea, California’s largest lake, the microbial community of this declining ecosystem has been largely overlooked. We collected seawater from a single location within the Salton Sea at 0 m, 3 m, 4 m, 5 m, 7 m, 9 m, 10 m, and 10.5 m depths in August 2021, December 2021, and April 2022. ResultsWe observed that the water column microbiome significantly varied by season (R² = 0.59,P = 0.003). Temperature (R² = 0.27,P = 0.004), dissolved organic matter (R² = 0.13,P = 0.004), and dissolved oxygen (R² = 0.089,P = 0.004) were significant drivers of seasonal changes in microbial composition. In addition, several halophilic mixotrophs and other extremotolerant bacteria were consistently identified in samples across depths and time points, though their relative abundances fluctuated by season. We found that while sulfur cycling genes were present in all metagenomes, their relative coverages fluctuated by pathway and season throughout the water column. Sulfur oxidation and incomplete sulfur oxidation pathways were conserved in the microbiome across seasons. ConclusionsOur work demonstrates that the microbiome within the Salton Seawater has the capacity to metabolize sulfur species and utilize multiple trophic strategies, such as alternating between chemorganotrophy and chemolithoautrophy, to survive this harsh, fluctuating environment. Together, these results suggest that the Salton Sea microbiome is integral in the geochemical cycling of this ever-changing ecosystem and thus contributes to the seasonal dynamics of the Salton Sea. Further work is required to understand how these environmental bacteria are implicated relationship between the Salton Sea’s sulfur cycle, dust proliferation, and respiratory distress experienced by the local population. 

Here we provide percent contribution of mineral associated (i.e., heavy fraction - HF) and relatively more labile (i.e., light fraction - LF) organic matter through soil profiles and along hillslope catena within sites in the Critical Zone Network (CZNet) Geomicrobiology cluster. Each sample is separated into a HF an a LF utilizing a 1.85 g cm-3 sodium polytungstate (3Na2WO4·9WO3·H2O or Na6 [H2W12O40]) solution. The resultant fractions are run for percent carbon (C) and nitrogen (N) and their associated stable isotopes (δ13C and δ15N) to offer novel insights in soil organic matter processes. Samples that were either too small for analytical analysis or below instrument detection limit are labeled with BDL. 

This data is an on-going collection of soil temperature, soil moisture, soil CO2 concentration, and soil O2 concentration starting in October 2021. We have installed sensors and probes at different soil depths across landscapes in five of the former Critical Zone Observatory locations (see the document named "sensor location"). Soil temperature and moisture are measured using Acclima SDI-12 sensors. Soil CO2 concentrations are measured using Eosense CO2 probes (switching to Vaisala GMP343 and GMP251 in 2023). Soil O2 concentrations are measured using Apogee SO-110-L-10 soil oxygen sensors. This dataset, along with our measurements of soil geomicrobiology and biogeochemistry (available in EarthChem), will help us understand the role of microbes as drivers of Critical Zone biogeochemistry and soil formation. 

IntroductionThe 1980 eruption of Mount St. Helens had devastating effects above and belowground in forested montane ecosystems, including the burial and destruction of soil microbes. Soil microbial propagules and legacies in recovering ecosystems are important for determining post-disturbance successional trajectories. Soil microorganisms regulate nutrient cycling, interact with many other organisms, and therefore may support successional pathways and complementary ecosystem functions, even in harsh conditions. Historic forest management methods, such as old-growth and clearcut regimes, and locations of historic short-term gopher enclosures (Thomomys talpoides), to evaluate community response to forest management practices and to examine vectors for dispersing microbial consortia to the surface of the volcanic landscape. These biotic interactions may have primed ecological succession in the volcanic landscape, specifically Bear Meadow and the Pumice Plain, by creating microsite conditions conducive to primary succession and plant establishment. Methods and resultsUsing molecular techniques, we examined bacterial, fungal, and AMF communities to determine how these variables affected microbial communities and soil properties. We found that bacterial/archaeal 16S, fungal ITS2, and AMF SSU community composition varied among forestry practices and across sites with long-term lupine plots and gopher enclosures. The findings also related to detected differences in C and N concentrations and ratios in soil from our study sites. Fungal communities from previously clearcut locations were less diverse than in gopher plots within the Pumice Plain. Yet, clearcut meadows harbored fewer ancestral AM fungal taxa than were found within the old-growth forest. DiscussionBy investigating both forestry practices and mammals in microbial dispersal, we evaluated how these interactions may have promoted revegetation and ecological succession within the Pumice Plains of Mount St. Helens. In addition to providing evidence about how dispersal vectors and forest structure influence post-eruption soil microbiomes, this project also informs research and management communities about belowground processes and microbial functional traits in facilitating succession and ecosystem function. 

Leaf-cutter ants (LCAs) are widely distributed and alter the physical and biotic architecture above and below ground. In neotropical rainforests, they create aboveground and belowground disturbance gaps that facilitate oxygen and carbon dioxide exchange. Within the hyperdiverse neotropical rainforests, arbuscular mycorrhizal (AM) fungi occupy nearly all of the forest floor. Nearly every cubic centimeter of soil contains a network of hyphae of Glomeromycotina, fungi that form arbuscular mycorrhizae. Our broad question is as follows: how can alternative mycorrhizae, which are—especially ectomycorrhizae—essential for the survival of some plant species, become established? Specifically, is there an ant–mycorrhizal fungus interaction that facilitates their establishment in these hyperdiverse ecosystems? In one lowland Costa Rican rainforest, nests of the LCAAtta cephalotescover approximately 1.2% of the land surface that is broadly scattered throughout the forest. On sequencing the DNA from soil organisms, we found the inocula of many AM fungi in their nests, but the nests also contained the inocula of ectomycorrhizal, orchid mycorrhizal, and ericoid mycorrhizal fungi, includingScleroderma sinnamariense, a fungus critical toGnetum leyboldii, an obligate ectomycorrhizal plant. When the nests were abandoned, new root growth into the nest offered opportunities for new mycorrhizal associations to develop. Thus, the patches created by LCAs appear to be crucial sites for the establishment and survival of shifting mycorrhizal plant–fungal associations, in turn facilitating the high diversity of these communities. A better understanding of the interactions of organisms, including cross-kingdom and ant–mycorrhizal fungal interactions, would improve our understanding of how these ecosystems might tolerate environmental change.